An open-source framework for end-to-end analysis of electronic health record data
medical records
software
Optimal distance metrics for single-cell RNA-seq populations
scrna-seq
rna-seq
distances
benchmarking
Integrating single-cell RNA-seq datasets with substantial batch effects
single-cell
rna-seq
integration
batch effects
methods
Population-level integration of single-cell datasets enables multi-scale analysis across samples
single-cell
rna-seq
methods
integration
software
Delineating mouse β-cell identity during lifetime and in diabetes with a single cell atlas
single-cell
rna-seq
mouse
pancreas
atlas
Best practices for single-cell analysis across modalities
single-cell
multiomics
best practices
review
Benchmarking atlas-level data integration in single-cell genomics
single-cell
rna-seq
integration
benchmarking
splatPop: simulating population scale single-cell RNA sequencing data
single-cell
rna-seq
simulation
population
software
methods
Over 1000 tools reveal trends in the single-cell RNA-seq analysis landscape
single-cell
rna-seq
database
Sfaira accelerates data and model reuse in single cell genomics
single-cell
rna-seq
database
website
HiTIME: An efficient model-selection approach for the detection of unknown drug metabolites in LC-MS data
mass spectrometry
software
Opportunities and challenges in long-read sequencing data analysis
data analysis
long read
database
website
Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk
organogenesis
single-cell
rna-seq
mouse
kidney
development
nephron
Kidney micro-organoids in suspension culture as a scalable source of human pluripotent stem cell-derived kidney cells
nephron
stem cell
suspension culture
single-cell
rna-seq
kidney
organoids
Single-cell analysis reveals congruence between kidney organoids and human fetal kidney
single-cell
rna-seq
kidney
organoids
Nephron progenitor commitment is a stochastic process influenced by cell migration
single-cell
rna-seq
mouse
kidney
nephron
Evaluation of variability in human kidney organoids
kidney
organoids
variability
rna-seq
single-cell
Clustering trees: a visualization for evaluating clusterings at multiple resolutions
methods
visualisation
clustering
software
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
single-cell
rna-seq
database
Splatter: simulation of single-cell RNA sequencing data
single-cell
rna-seq
methods
software
simulation
Gene length and detection bias in single cell RNA sequencing protocols
single-cell
rna-seq
gene length
Circulating tumour cells from patients with colorectal cancer have cancer stem cell hallmarks in ex vivo culture
drug toxicity
cancer
colorectal
stem cell
rna-seq
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