Talks

Suggestions for successful scRNA-seq analysis

single-cell
rna-seq
analysis
best practices
Presentation at the 9th German Pharm-Tox Summit on planning a successful scRNA-seq experiment from the analysts perspective
Mar 13, 2024

Successful scRNA-seq analysis

single-cell
rna-seq
analysis
best practices
Presentation at the ILC Summer School 2022 on planning a successful scRNA-seq experiment
Jun 30, 2022

Interoperability between Bioconductor and Python for scRNA-seq analysis

single-cell
rna-seq
software
interoperability
R
python
Bioconductor
Invited keynote at the European Bioconductor meeting 2020
Dec 18, 2020

Tools and techniques for single-cell RNA sequencing data

single-cell
rna-seq
simulation
database
visualisation
kidney
organoids
analysis
software
splatter
clustree
scRNA-tools
PhD
My PhD completion seminar
Mar 22, 2019

Tools, simulations and trees for scRNA-seq

single-cell
rna-seq
simulation
database
visualisation
splatter
clustree
scrna-tools
software
kidney
organoids
analysis
PhD
Presentation at the Institute of Computational Biology where I described my PhD projects
Sep 27, 2018

Using clustering trees to visualise scRNA-seq data

single-cell
rna-seq
clustering
visualisation
software
clustree
R
CRAN
Selected talk at the Genome Informatics 2018 conference where I described how clustering trees can be used with scRNA-seq data
Sep 17, 2018

clustree: producing clustering trees using ggraph

visualisation
software
R
Presentation at the userR! 2018 conference introducing the clustree package and demonstrating how it makes use of the ggraph package
Jul 21, 2018

Clustering trees for visualising scRNA-seq data

visualisation
clustering
software
clustree
R
CRAN
Selected talk at the Oz Single Cells 2018 conference where I presented clustering trees and the clustree package
Jul 16, 2018

Splatter, a package for simulating single-cell RNA sequencing data

single-cell
RNA-seq
simulation
software
splatter
R
bioconductor
Selected talk at the 2017 Bioconductor Asia Meeting where I presented technical details of the Splatter package
Nov 17, 2017

Simulation and analysis tools for single-cell RNA sequencing data

single-cell
rna-seq
simulation
database
splatter
scRNA-tools
software
Selected talk at the Genome Informatics 2017 conference describing Splatter and the scRNA-tools database
Nov 1, 2017

Single cells, simulation and kidneys in a dish

single-cell
rna-seq
simulation
kidney
organoids
visualisation
scrna-tools
database
splatter
Presentation at the Berkeley Statistics and Genomics Seminar describing my PhD projects
Oct 27, 2017

Building a clustering tree

visualisation
clustering
Joining the Dots Visualisation Symposium talk describing the clustering tree visualisation algorithm
Aug 18, 2017

Single-cells, simulation and kidneys in a dish

single-cell
rna-seq
simulation
visualisation
database
organoids
kidney
software
splatter
scRNA-tools
R
PhD
WEHI Bioinformatics seminar series presenting my PhD projects
Jul 17, 2017

Simplifying simulation of single-cell RNA-seq

single-cell
rna-seq
simulation
software
splatter
R
Presentation at the 2016 COMBINE student symposium introducing the Splatter package and the Splat scRNA-seq simulation model
Oct 31, 2016
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