Phd Commits

Functions for scraping git commits from repositories associated with a PhD (or anything else) and plotting them.

Tools and techniques for single-cell RNA sequencing data

My PhD completion seminar

Tools, simulations and trees for scRNA-seq

Presentation at the Institute of Computational Biology where I described my PhD projects.

Using clustering trees to visualise scRNA-seq data

Selected talk at the Genome Informatics 2018 conference where I described how clustering trees can be used with scRNA-seq data.

clustree: producing clustering trees using ggraph

Presentation at the userR! 2018 conference introducing the clustree package and demonstrating how it makes use of the ggraph package.

Clustering trees for visualising scRNA-seq data

Selected talk at the Oz Single Cells 2018 conference where I presented clustering trees and the clustree package.

Clustering trees: a visualization for evaluating clusterings at multiple resolutions

Clustering techniques are widely used in the analysis of large datasets to group together samples with similar properties. For example, clustering is often used in the field of single-cell RNA-sequencing in order to identify different cell types …


CRAN R package for creating clustering trees, a visualisation for looking at clustering across resolutions.

Single cells, simulation and kidneys in a dish

Presentation at the Berkeley Statistics and Genomics Seminar describing my PhD projects.

Joining the Dots Twitter analysis

Analysis of Twitter activity at the Joining the Dots visualisation symposium.