Back to the SCE-verse!

Updated analysis of packages that use the SingleCellExperiment object in 2020

Bioconductor 3.11 wrap-up

My wrap-up of the Bioconductor 3.11 release.

Caching blogdown posts

Description of how I cache blogdown Markdown files.

Phd Commits

Functions for scraping git commits from repositories associated with a PhD (or anything else) and plotting them.

R Package Development Workshop

Materials for the COMBINE Australia R package development workshop


An R package for setting up a website to display analysis of Twitter hashtags

Twitter Stats

Analysis of Twitter activity for hashtags from various events, usually academic conferences.

Using clustering trees to visualise scRNA-seq data

Selected talk at the Genome Informatics 2018 conference where I described how clustering trees can be used with scRNA-seq data.

clustree: producing clustering trees using ggraph

Presentation at the userR! 2018 conference introducing the clustree package and demonstrating how it makes use of the ggraph package.

Clustering trees for visualising scRNA-seq data

Selected talk at the Oz Single Cells 2018 conference where I presented clustering trees and the clustree package.