Interoperability between Bioconductor and Python for scRNA-seq analysis

Invited keynote at the European Bioconductor meeting 2020

Bioconductor 3.12 wrap-up

My wrap-up of the Bioconductor 3.12 release.


Bioconductor R package converting between scRNA-seq objects.

Back to the SCE-verse!

Updated analysis of packages that use the SingleCellExperiment object in 2020

Bioconductor 3.11 wrap-up

My wrap-up of the Bioconductor 3.11 release.

Scanpy in R

Tutorial describing how to interact with the Scanpy Python package from R.

Caching blogdown posts

Description of how I cache blogdown Markdown files.

Phd Commits

Functions for scraping git commits from repositories associated with a PhD (or anything else) and plotting them.

R Package Development Workshop

Materials for the COMBINE Australia R package development workshop


An R package for setting up a website to display analysis of Twitter hashtags