anndataR

single-cell
rna-seq
interoperability
software
R
Bioconductor
AnnData interoperability in R
Authors

Robrecht Cannoodt

Luke Zappia

Martin Morgan

Louise Deconinck

Danila Bredikhin

Isaac Virshup

Brian Schilder

Chananchida Sang-aram

Data Intuitive

Chan Zuckerberg Initiative

scverse consortium

Date

August 6, 2025

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{anndataR} is an R implementation of the AnnData data structure, used in the Python scverse ecosystem. It provides an R AnnData object with native reading and writing of H5AD files. Users can interact with the AnnData object directly, or use flexible functions to convert to and from SingleCellExperiment or Seurat objects.