Packages

Splatter

Bioconductor R package for simulating scRNA-seq data

anndataR

AnnData interoperability in R

zellkonverter

Bioconductor R package for converting between scRNA-seq objects

clustree

clustering

visualisation

software

CRAN R package for creating clustering trees, a visualisation for looking at clustering across resolutions

clamour

twitter

analysis

software

An R package for setting up a website to display analysis of Twitter hashtags

doilinker

software

An R package for linking DOIs between preprints and publications

Scripts

prettytc

software

python

A Python script for pretty printing of TeXcount output

tidydirectory

software

python

organisation

A Python script for tidying directories

Analysis and data

OECD housing

analysis

housing

python

Some basic analysis of housing data from the OECD performed in Python

PhD commits

visualisation

Functions for scraping git commits from repositories associated with a PhD (or anything else) and plotting them

Twitter stats

website

twitter

analysis

Analysis of Twitter activity for hashtags from various events, usually academic conferences

NBA positions

dataset

A dataset of NBA positions designed to replace the iris dataset

Web

scRNA-tools

Database and website cataloguing software tools for analysing single-cell RNA sequencing data

sfaira portal

A website built using Vue for viewing the sfaira database

Community and training

Open Problems in Single-Cell Analysis

benchmarking

single-cell

website

An effort to formalise and benchmark open problems in single-cell genomics analysis

Single-cell best practices

An online book covering the best practices for multiomic single-cell analysis with extensive tutorials and code examples

Scanpy in R

Tutorial describing how to interact with the Scanpy Python package from R

R Package Development Workshop

workshop

package development

training

Materials for the COMBINE Australia R package development workshop

Projects

Categories

Packages

Splatter

anndataR

zellkonverter

clustree

clamour

doilinker

Scripts

prettytc

tidydirectory

Analysis and data

OECD housing

PhD commits

Twitter stats

NBA positions

Web

scRNA-tools

sfaira portal

Community and training

Open Problems in Single-Cell Analysis

Single-cell best practices

Scanpy in R

R Package Development Workshop