Packages and scripts

Splatter

Bioconductor R package for simulating scRNA-seq data

zellkonverter

interoperability

Bioconductor R package for converting between scRNA-seq objects

clustree

CRAN R package for creating clustering trees, a visualisation for looking at clustering across resolutions

clamour

An R package for setting up a website to display analysis of Twitter hashtags

doilinker

An R package for linking DOIs between preprints and publications

prettytc

A Python script for pretty printing of TeXcount output

tidydirectory

A Python script for tidying directories

Analysis and data

OECD housing

Some basic analysis of housing data from the OECD performed in Python

PhD commits

Functions for scraping git commits from repositories associated with a PhD (or anything else) and plotting them

Twitter stats

Analysis of Twitter activity for hashtags from various events, usually academic conferences

NBA positions

A dataset of NBA positions designed to replace the iris dataset

Web

scRNA-tools

Database and website cataloguing software tools for analysing single-cell RNA sequencing data

sfaira portal

A website built using Vue for viewing the sfaira database

Community and training

Open Problems in Single-Cell Analysis

An effort to formalise and benchmark open problems in single-cell genomics analysis

Single-cell best practices

An online book covering the best practices for multiomic single-cell analysis with extensive tutorials and code examples

Scanpy in R

interoperability

Tutorial describing how to interact with the Scanpy Python package from R

R Package Development Workshop

package development

Materials for the COMBINE Australia R package development workshop