Posts

Sketchnotes of Rob Patro's scverse conference keynote 'Upstream of the single-cell data deluge: On the importance of accurate, efficient and open methods for preprocessing single-cell data'

scverse conference

scverse
conference
sketchnotes
Recap of the first scverse conference and sketchnotes of keynote talks
Sep 15, 2024
2 min

 

scRNA-tools low-maintenance mode

scRNA-tools
database
Announcement of the scRNA-tools database entering low-maintenance mode, some more detail and various thoughts
Mar 4, 2024
3 min

 

Bioconductor 3.12 wrap-up

bioconductor
R
My wrap-up of the Bioconductor 3.12 release
Oct 30, 2020
3 min

triple j’s Requestival

analysis
music
Analysis of the songs played during triple j’s Requestival event
Jul 11, 2020
9 min

Back to the SCE-verse!

bioconductor
R
scrna-seq
SingleCellExperiment
analysis
Updated analysis of packages that use the SingleCellExperiment object in 2020
May 12, 2020
10 min

 

Bioconductor 3.11 wrap-up

bioconductor
R
My wrap-up of the Bioconductor 3.11 release
Apr 29, 2020
3 min

 

Caching blogdown posts

blogdown
R
Description of how I cache blogdown Markdown files
Apr 9, 2020
6 min

Exploring the SCE-verse

bioconductor
R
scrna-seq
SingleCellExperiment
analysis
Analysis of packages that use the SingleCellExperiment object
Jun 9, 2018
14 min

Bioconductor 3.7 wrap-up

bioconductor
R
scrna-seq
A wrap-up of the Bioconductor 3.7 release
May 4, 2018
4 min

My AFL-Elo model

afl
elo
sport
My Elo model for predicting AFL games
Apr 21, 2018
13 min

Abstract purple photograph of water droplets

Welcome to Blogdown!

blogdown
My new Blogdown blog
Mar 24, 2018
1 min

Graph of connections between Twitter users during the Joining the Dots visualisation symposium

Joining the Dots Twitter analysis

conference
visualisation
twitter
Analysis of Twitter activity at the Joining the Dots visualisation symposium
Aug 18, 2017
9 min

Image of a clustering tree visualisation

Building a clustering tree

R
scrna-seq
clustering tree
Introductory post to building a clustering tree
Jul 19, 2017
32 min

Python All the Things

PyConAU 2016

python
conference
thoughts
My thoughts after attending PyConAU 2016
Aug 18, 2016
5 min

 

Gantt charts in R

R
project management
gantt chart
excel
Steps for creating Gantt charts in R
Jun 13, 2016
8 min

 

Bioconductor 3.3 packages

R
bioconductor
Wrap up of new packages in the Bioconductor 3.3 release
May 3, 2016
1 min

 

Extracting alignment statistics using Python

python
alignment
statistics
A Python script for extracting alignment statistics from BAM files
Mar 30, 2016
2 min

 

My Markdown thesis

writing
markdown
thesis
latex
A description of the setup for building my Masters thesis using Markdown and Pandoc
Sep 13, 2015
3 min

 

Open science workshops

open science
workshop
collaboration
This Saturday I attended the first workshop run by Open Science Workshops at the Inspire9 collaborative workspace
Jul 20, 2014
2 min
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