Over the last few years the number of methods for analysing scRNA-seq has exploded and there is now well over 200 software tools available. Each of these tools need to make a choice about how they store and represent the data used during their analysis. One attempt to standardise the data structures that are used is the SingleCellExperiment package created by Davide Risso and Aaron Lun, with help from Keegan Korthauer.

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Luke Zappia

Bioinformatician in training

PhD student